In recent years, there has been a significant growth in the importance of data mining of graph-structured data due to this technology's rapid increase in both scale and application areas. Many previous studies have investigated decision tree learning on Semantic Web-based linked data to uncover implicit knowledge. In the present paper, we suggest a new random forest algorithm for linked data to overcome the underlying limitations of the decision tree algorithm, such as local optimal decisions and generalization error. Moreover, we designed a parallel processing environment for random forest learning to manage large-size linked data and increase the efficiency of multiple tree generation. For this purpose, we modified the previous candidate feature searching method of the decision tree algorithm for linked data to reduce the feature searching space of random forest learning and developed feature selection methods that are adjusted to linked data. Using a distributed index-based search engine, we designed a parallel random forest learning system for linked data to generate random forests in parallel. Our proposed system enables users to simultaneously generate multiple decision trees from distributed stored linked data. To evaluate the performance of the proposed algorithm, we performed experiments to compare the classification accuracy when using the single decision tree algorithm. The experimental results revealed that our random forest algorithm is more accurate than the single decision tree algorithm.