The issue of a low minority class identification rate caused by data imbalance in anomaly detection tasks is addressed by the proposal of a GAN-SR-based intrusion detection model for industrial control systems. First, to correct the imbalance of minority classes in the dataset, a generative adversarial network (GAN) processes the dataset to reconstruct new minority class training samples accordingly. Second, high-dimensional feature extraction is completed using stacked asymmetric depth self-encoder to address the issues of low reconstruction error and lengthy training times. After that, a random forest (RF) decision tree is built, and intrusion detection is carried out using the features that SNDAE retrieved. According to experimental validation on the UNSW-NB15, SWaT and Gas Pipeline datasets, the GAN-SR model outperforms SNDAE-SVM and SNDAE-KNN in terms of detection performance and stability.