Noisy labels in training data can significantly harm the performance of deep neural networks (DNNs). Recent research on learning with noisy labels uses a property of DNNs called the memorization effect to divide the training data into a set of data with reliable labels and a set of data with unreliable labels. Methods introducing semi-supervised learning strategies discard the unreliable labels and assign pseudo-labels generated from the confident predictions of the model. So far, this semi-supervised strategy has yielded the best results in this field. However, we observe that even when models are trained on balanced data, the distribution of the pseudo-labels can still exhibit an imbalance that is driven by data similarity. Additionally, a data bias is seen that originates from the division of the training data using the semi-supervised method. If we address both types of bias that arise from pseudo-labels, we can avoid the decrease in generalization performance caused by biased noisy pseudo-labels. We propose a learning method with noisy labels that introduces unbiased pseudo-labeling based on causal inference. The proposed method achieves significant accuracy gains in experiments at high noise rates on the standard benchmarks CIFAR-10 and CIFAR-100.