Two simple but useful methods, called the deep learning methods, for making multilayer neural networks tolerant to multiple link-weight and neuron-output faults, are proposed. The methods make the output errors in learning phase smaller than those in practical use. The abilities of fault-tolerance of the multilayer neural networks in practical use, are analyzed in the relationship between the output errors in learning phase and in practical use. The analytical result shows that the multilayer neural networks have complete (100%) fault-tolerance to multiple weight-and-neuron faults in practical use. The simulation results concerning the rate of successful learnings, the ability of fault-tolerance, and the learning time, are also shown.