Clustering is one of the most important topics in the field of knowledge discovery from databases. Especially, hierarchical clustering is useful since it gives a hierarchical view of a whole database and can be used to guide users in browsing a huge database. In many cases, clustering can be modeled as a graph partitioning problem. When an appropriate distance function between database objects is given, a database can be viewed as an edge-weighted complete graph, where vertices are database objects and weights of edges are distances between them. Then a process of MST (Minimal Spanning Tree) construction can be viewed as a process of a single-linkage agglomerative clustering process for database objects. In this paper, we propose an efficient MST construction method for a large complete metric graph, which is derived from a database with a metric distance function defined on it. Our method utilizes a metric index to reduce the number of distance calculations. The basic idea is to exclude those edges less probable to be a part of an MST by using the metric postulate. For this purpose, we introduce a new metric index named MetricMatrix. Experimental results show that our method can drastically reduce the number of distance calculations needed for MST construction in comparison with the classical method.