IEICE TRANSACTIONS on Fundamentals
Incorporation of Cycles and Inhibitory Arcs into the Timed Petri Net Model of Signaling Pathway
Summary :
In our privious paper, we proposed an algorithm that determines delay times of a timed Petri net from the structural information of a signaling pathway, but Petri net structures containing cycles and inhibitory arcs were not considered. This paper provides conditions for cycle-contained Petri nets to have reasonable delay times. Furthermore, handling of inhibitory arcs are discussed in terms of the reaction rate of inhibitory interaction in signaling pathway, especially the conversion process of Petri net with inhibitory arc to the one without inhibitory arc is given.
- Publication
- IEICE TRANSACTIONS on Fundamentals Vol.E96-A No.2 pp.514-524
- Publication Date
- 2013/02/01
- Publicized
- Online ISSN
- 1745-1337
- DOI
- 10.1587/transfun.E96.A.514
- Type of Manuscript
- Special Section PAPER (Special Section on Mathematical Systems Science and its Applications)
- Category
- Concurrent Systems
Authors
Keyword
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Yuki MURAKAMI, Qi-Wei GE, Hiroshi MATSUNO, "Incorporation of Cycles and Inhibitory Arcs into the Timed Petri Net Model of Signaling Pathway" in IEICE TRANSACTIONS on Fundamentals,
vol. E96-A, no. 2, pp. 514-524, February 2013, doi: 10.1587/transfun.E96.A.514.
Abstract: In our privious paper, we proposed an algorithm that determines delay times of a timed Petri net from the structural information of a signaling pathway, but Petri net structures containing cycles and inhibitory arcs were not considered. This paper provides conditions for cycle-contained Petri nets to have reasonable delay times. Furthermore, handling of inhibitory arcs are discussed in terms of the reaction rate of inhibitory interaction in signaling pathway, especially the conversion process of Petri net with inhibitory arc to the one without inhibitory arc is given.
URL: https://global.ieice.org/en_transactions/fundamentals/10.1587/transfun.E96.A.514/_p
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@ARTICLE{e96-a_2_514,
author={Yuki MURAKAMI, Qi-Wei GE, Hiroshi MATSUNO, },
journal={IEICE TRANSACTIONS on Fundamentals},
title={Incorporation of Cycles and Inhibitory Arcs into the Timed Petri Net Model of Signaling Pathway},
year={2013},
volume={E96-A},
number={2},
pages={514-524},
abstract={In our privious paper, we proposed an algorithm that determines delay times of a timed Petri net from the structural information of a signaling pathway, but Petri net structures containing cycles and inhibitory arcs were not considered. This paper provides conditions for cycle-contained Petri nets to have reasonable delay times. Furthermore, handling of inhibitory arcs are discussed in terms of the reaction rate of inhibitory interaction in signaling pathway, especially the conversion process of Petri net with inhibitory arc to the one without inhibitory arc is given.},
keywords={},
doi={10.1587/transfun.E96.A.514},
ISSN={1745-1337},
month={February},}
Copy
TY - JOUR
TI - Incorporation of Cycles and Inhibitory Arcs into the Timed Petri Net Model of Signaling Pathway
T2 - IEICE TRANSACTIONS on Fundamentals
SP - 514
EP - 524
AU - Yuki MURAKAMI
AU - Qi-Wei GE
AU - Hiroshi MATSUNO
PY - 2013
DO - 10.1587/transfun.E96.A.514
JO - IEICE TRANSACTIONS on Fundamentals
SN - 1745-1337
VL - E96-A
IS - 2
JA - IEICE TRANSACTIONS on Fundamentals
Y1 - February 2013
AB - In our privious paper, we proposed an algorithm that determines delay times of a timed Petri net from the structural information of a signaling pathway, but Petri net structures containing cycles and inhibitory arcs were not considered. This paper provides conditions for cycle-contained Petri nets to have reasonable delay times. Furthermore, handling of inhibitory arcs are discussed in terms of the reaction rate of inhibitory interaction in signaling pathway, especially the conversion process of Petri net with inhibitory arc to the one without inhibitory arc is given.
ER -
English
