Recent studies utilize multiple kernel learning to deal with incomplete-data problem. In this study, we introduce new methods that do not only complete multiple incomplete kernel matrices simultaneously, but also allow control of the flexibility of the model by parameterizing the model matrix. By imposing restrictions on the model covariance, overfitting of the data is avoided. A limitation of kernel matrix estimations done via optimization of an objective function is that the positive definiteness of the result is not guaranteed. In view of this limitation, our proposed methods employ the LogDet divergence, which ensures the positive definiteness of the resulting inferred kernel matrix. We empirically show that our proposed restricted covariance models, employed with LogDet divergence, yield significant improvements in the generalization performance of previous completion methods.

With the huge influx of various data nowadays, extracting knowledge from them has become an interesting but tedious task among data scientists, particularly when the data come in heterogeneous form and have missing information. Many data completion techniques had been introduced, especially in the advent of kernel methods — a way in which one can represent heterogeneous data sets into a single form: as kernel matrices. However, among the many data completion techniques available in the literature, studies about mutually completing several incomplete kernel matrices have not been given much attention yet. In this paper, we present a new method, called Mutual Kernel Matrix Completion (MKMC) algorithm, that tackles this problem of mutually inferring the missing entries of multiple kernel matrices by combining the notions of data fusion and kernel matrix completion, applied on biological data sets to be used for classification task. We first introduced an objective function that will be minimized by exploiting the EM algorithm, which in turn results to an estimate of the missing entries of the kernel matrices involved. The completed kernel matrices are then combined to produce a model matrix that can be used to further improve the obtained estimates. An interesting result of our study is that the E-step and the M-step are given in closed form, which makes our algorithm efficient in terms of time and memory. After completion, the (completed) kernel matrices are then used to train an SVM classifier to test how well the relationships among the entries are preserved. Our empirical results show that the proposed algorithm bested the traditional completion techniques in preserving the relationships among the data points, and in accurately recovering the missing kernel matrix entries. By far, MKMC offers a promising solution to the problem of mutual estimation of a number of relevant incomplete kernel matrices.

It has been reported repeatedly that discriminative learning of distance metric boosts the pattern recognition performance. Although the ITML (Information Theoretic Metric Learning)-based methods enjoy an advantage that the Bregman projection framework can be applied for optimization of distance metric, a weak point of ITML-based methods is that the distance threshold for similarity/dissimilarity constraints must be determined manually, onto which the generalization performance is sensitive. In this paper, we present a new formulation of metric learning algorithm in which the distance threshold is optimized together. Since the optimization is still in the Bregman projection framework, the Dykstra algorithm can be applied for optimization. A nonlinear equation has to be solved to project the solution onto a half-space in each iteration. We have developed an efficient technique for projection onto a half-space. We empirically show that although the distance threshold is automatically tuned for the proposed metric learning algorithm, the accuracy of pattern recognition for the proposed algorithm is comparable, if not better, to the existing metric learning methods.