IEICE TRANSACTIONS on Information
Mutual Kernel Matrix Completion
Summary :
With the huge influx of various data nowadays, extracting knowledge from them has become an interesting but tedious task among data scientists, particularly when the data come in heterogeneous form and have missing information. Many data completion techniques had been introduced, especially in the advent of kernel methods — a way in which one can represent heterogeneous data sets into a single form: as kernel matrices. However, among the many data completion techniques available in the literature, studies about mutually completing several incomplete kernel matrices have not been given much attention yet. In this paper, we present a new method, called Mutual Kernel Matrix Completion (MKMC) algorithm, that tackles this problem of mutually inferring the missing entries of multiple kernel matrices by combining the notions of data fusion and kernel matrix completion, applied on biological data sets to be used for classification task. We first introduced an objective function that will be minimized by exploiting the EM algorithm, which in turn results to an estimate of the missing entries of the kernel matrices involved. The completed kernel matrices are then combined to produce a model matrix that can be used to further improve the obtained estimates. An interesting result of our study is that the E-step and the M-step are given in closed form, which makes our algorithm efficient in terms of time and memory. After completion, the (completed) kernel matrices are then used to train an SVM classifier to test how well the relationships among the entries are preserved. Our empirical results show that the proposed algorithm bested the traditional completion techniques in preserving the relationships among the data points, and in accurately recovering the missing kernel matrix entries. By far, MKMC offers a promising solution to the problem of mutual estimation of a number of relevant incomplete kernel matrices.
- Publication
- IEICE TRANSACTIONS on Information Vol.E100-D No.8 pp.1844-1851
- Publication Date
- 2017/08/01
- Publicized
- 2017/05/17
- Online ISSN
- 1745-1361
- DOI
- 10.1587/transinf.2017EDP7059
- Type of Manuscript
- PAPER
- Category
- Artificial Intelligence, Data Mining
Authors
Rachelle RIVERO
Gunma University,University of the Philippines
Richard LEMENCE
University of the Philippines
Tsuyoshi KATO
Gunma University
Keyword
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Rachelle RIVERO, Richard LEMENCE, Tsuyoshi KATO, "Mutual Kernel Matrix Completion" in IEICE TRANSACTIONS on Information,
vol. E100-D, no. 8, pp. 1844-1851, August 2017, doi: 10.1587/transinf.2017EDP7059.
Abstract: With the huge influx of various data nowadays, extracting knowledge from them has become an interesting but tedious task among data scientists, particularly when the data come in heterogeneous form and have missing information. Many data completion techniques had been introduced, especially in the advent of kernel methods — a way in which one can represent heterogeneous data sets into a single form: as kernel matrices. However, among the many data completion techniques available in the literature, studies about mutually completing several incomplete kernel matrices have not been given much attention yet. In this paper, we present a new method, called Mutual Kernel Matrix Completion (MKMC) algorithm, that tackles this problem of mutually inferring the missing entries of multiple kernel matrices by combining the notions of data fusion and kernel matrix completion, applied on biological data sets to be used for classification task. We first introduced an objective function that will be minimized by exploiting the EM algorithm, which in turn results to an estimate of the missing entries of the kernel matrices involved. The completed kernel matrices are then combined to produce a model matrix that can be used to further improve the obtained estimates. An interesting result of our study is that the E-step and the M-step are given in closed form, which makes our algorithm efficient in terms of time and memory. After completion, the (completed) kernel matrices are then used to train an SVM classifier to test how well the relationships among the entries are preserved. Our empirical results show that the proposed algorithm bested the traditional completion techniques in preserving the relationships among the data points, and in accurately recovering the missing kernel matrix entries. By far, MKMC offers a promising solution to the problem of mutual estimation of a number of relevant incomplete kernel matrices.
URL: https://global.ieice.org/en_transactions/information/10.1587/transinf.2017EDP7059/_p
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@ARTICLE{e100-d_8_1844,
author={Rachelle RIVERO, Richard LEMENCE, Tsuyoshi KATO, },
journal={IEICE TRANSACTIONS on Information},
title={Mutual Kernel Matrix Completion},
year={2017},
volume={E100-D},
number={8},
pages={1844-1851},
abstract={With the huge influx of various data nowadays, extracting knowledge from them has become an interesting but tedious task among data scientists, particularly when the data come in heterogeneous form and have missing information. Many data completion techniques had been introduced, especially in the advent of kernel methods — a way in which one can represent heterogeneous data sets into a single form: as kernel matrices. However, among the many data completion techniques available in the literature, studies about mutually completing several incomplete kernel matrices have not been given much attention yet. In this paper, we present a new method, called Mutual Kernel Matrix Completion (MKMC) algorithm, that tackles this problem of mutually inferring the missing entries of multiple kernel matrices by combining the notions of data fusion and kernel matrix completion, applied on biological data sets to be used for classification task. We first introduced an objective function that will be minimized by exploiting the EM algorithm, which in turn results to an estimate of the missing entries of the kernel matrices involved. The completed kernel matrices are then combined to produce a model matrix that can be used to further improve the obtained estimates. An interesting result of our study is that the E-step and the M-step are given in closed form, which makes our algorithm efficient in terms of time and memory. After completion, the (completed) kernel matrices are then used to train an SVM classifier to test how well the relationships among the entries are preserved. Our empirical results show that the proposed algorithm bested the traditional completion techniques in preserving the relationships among the data points, and in accurately recovering the missing kernel matrix entries. By far, MKMC offers a promising solution to the problem of mutual estimation of a number of relevant incomplete kernel matrices.},
keywords={},
doi={10.1587/transinf.2017EDP7059},
ISSN={1745-1361},
month={August},}
Copy
TY - JOUR
TI - Mutual Kernel Matrix Completion
T2 - IEICE TRANSACTIONS on Information
SP - 1844
EP - 1851
AU - Rachelle RIVERO
AU - Richard LEMENCE
AU - Tsuyoshi KATO
PY - 2017
DO - 10.1587/transinf.2017EDP7059
JO - IEICE TRANSACTIONS on Information
SN - 1745-1361
VL - E100-D
IS - 8
JA - IEICE TRANSACTIONS on Information
Y1 - August 2017
AB - With the huge influx of various data nowadays, extracting knowledge from them has become an interesting but tedious task among data scientists, particularly when the data come in heterogeneous form and have missing information. Many data completion techniques had been introduced, especially in the advent of kernel methods — a way in which one can represent heterogeneous data sets into a single form: as kernel matrices. However, among the many data completion techniques available in the literature, studies about mutually completing several incomplete kernel matrices have not been given much attention yet. In this paper, we present a new method, called Mutual Kernel Matrix Completion (MKMC) algorithm, that tackles this problem of mutually inferring the missing entries of multiple kernel matrices by combining the notions of data fusion and kernel matrix completion, applied on biological data sets to be used for classification task. We first introduced an objective function that will be minimized by exploiting the EM algorithm, which in turn results to an estimate of the missing entries of the kernel matrices involved. The completed kernel matrices are then combined to produce a model matrix that can be used to further improve the obtained estimates. An interesting result of our study is that the E-step and the M-step are given in closed form, which makes our algorithm efficient in terms of time and memory. After completion, the (completed) kernel matrices are then used to train an SVM classifier to test how well the relationships among the entries are preserved. Our empirical results show that the proposed algorithm bested the traditional completion techniques in preserving the relationships among the data points, and in accurately recovering the missing kernel matrix entries. By far, MKMC offers a promising solution to the problem of mutual estimation of a number of relevant incomplete kernel matrices.
ER -
English
